profile - دانشکده علوم
اعضای هیأت علمی دانشکده علوم
Sirous GHobadi
Associate Professor / علوم / Biology
Current courses
| Course Name | unit | term |
|---|---|---|
| plokijuhy | 3 | first semester Academic year 2025-2026 |
| 3 | first semester Academic year 2025-2026 | |
| Biological Specialties | 2 | first semester Academic year 2025-2026 |
| Bioinformatics foundations | 3 | first semester Academic year 2025-2026 |
Master Theses
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Investigating the effects of a diet containing a traditional Kurdish dairy product (Shiraz) on the growth performance of Japanese quail
Mahdi Gohari ghader 2025 -
The effect of hydroalcoholic extract of Echinacea purpurea on doxorubicin-induced toxicity in NMRI male mice
Nafiseh Asgari 2025Doxorubicin is one of the most widely used chemotherapy drugs in the treatment of various cancers. Despite its high efficacy, it is associated with serious side effects, including toxicity to the reproductive system. The main mechanism of these damages is attributed to increased oxidative stress, decreased antioxidant capacity, tissue destruction, and disruption of reproductive processes, including spermatogenesis in males. On the other hand, the use of plant compounds with antioxidant properties can be considered as an effective strategy to reduce these side effects. Echinacea purpurea is a medicinal plant rich in polysaccharides, flavonoids, and phenolic compounds, and its protective role against oxidative stress has been reported in numerous studies. The present study was designed to investigate the effect of hydroalcoholic extract of Echinacea purpurea on doxorubicin-induced testicular toxicity in NMRI male mice. In this experimental study, 28 male mice with an average weight of 25 to 30 grams were randomly divided into four groups of seven: the control group that received saline, the Echinacea extract group (100 mg/kg intraperitoneally every other day), the doxorubicin group (3 mg/kg intraperitoneally once a week for four weeks), and the combination group that simultaneously received doxorubicin and Echinacea extract by the above methods. After 28 days, the animals were anesthetized and blood and tissue sampling was performed. The indicators studied included testosterone levels, superoxide dismutase (SOD) activity, malondialdehyde (MDA) concentration, spermatogenesis parameters, and testicular histological changes. The obtained data were analyzed using one-way ANOVA and Tukey's post hoc test. The results of this study showed that the use of doxorubicin significantly reduced the percentage of sperm with progressive movement and viability, decreased the level of testosterone hormone and the activity of the antioxidant enzyme superoxide dismutase and increased the percentage of non-motile and non-progressive movement sperm, as well as increased the level of malondialdehyde in the serum of mice (p?0.05). The use of Echinacea extract alone improved the parameters of sperm motility and viability, increased testosterone levels, increased SOD activity and decreased MDA (p?0.05). In the group receiving Echinacea extract and doxorubicin simultaneously, the negative effects of doxorubicin on sperm motility and viability and oxidative stress indices were slightly modified, so that the percentage of live and non-motile sperm and MDA levels improved compared to the doxorubicin group, although the increase in SOD activity was not significant. Histological examination of the testes showed that doxorubicin caused structural damage, but concomitant administration of Echinacea extract was able to significantly modulate this damage, indicating the protective effect of Echinacea extract against doxorubicin toxicity on testicular tissue. Overall, the findings of this study indicate that Echinacea hydroalcoholic extract, with its antioxidant properties, is able to modulate part of the damage caused by doxorubicin on the male reproductive system and can be considered as a potential complementary option to reduce the side effects of chemotherapy.
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The First Database of Iranian Physiome and Personalized Medicine: Focus on Traditional Pharmacy Derived from kitab Al-Saydana fi al-Tibb
Ehsan Fizi 2023طب سنتي يكي از علوم تجربي است كه با ظهور و پيدايش علوم مدرن همچنان اهميت و جايگاه خود را مانند گذشته حفظ كرده است. طب سنتي كه در گذشته حاصل كسب تجارب در زمينهي استفاده از روشهاي درماني مختلف بوده است امروزه به صورت آكادميك و سازمان يافته شده تدريس و مورد بهره برداري قرار ميگيرد. طب سنتي بنابر تعريف ارائه شده توسط سازمان بهداشت جهاني عبارت است از مجموعهاي از مهارتها، دانش و روشهاي مبتني بر تجربه كه به منظور پيشگيري، كاهش و درمان انواع بيماريها مورد استفاده قرار ميگيرد. كتاب الصيدنه في الطب (داروشناسي در پزشكي) آخرين اثر ابوريحان بيروني است كه به صورت تنها نسخهي اصلاح نشده به زبان عربي به ما رسيده است. اين اثر گرانبها منبعي در داروشناسي سدههاي ميانهي خاورزمين است كه در آن بيش از هزار دارو با منشا گياهي، حيواني و معدني با اشاره به نامهاي آنها به بسياري از زبانها و گويشها توصيف شده است. در صيدنه اثري از مدح و اهدا نامه معمول ديده نميشود و از هدفهاي نوشتن آن نيز مستقيما سخني نرفته است. بيروني با درك اهميت زياد اين مسئله، حدود ???? نام گياه، حيوان، مادهي معدني و فراوردههاي آنها را به زبانهاي عربي، يوناني، سرياني، هندي، فارسي، خوارزمي، سغدي، تركي و جز اينها گرد آورده و توضيح داده است و بدين ترتيب گام جديدي در راه تنظيم و ترتيب اصطلاحات دارويي زمان خود برداشته است. با توجه به اين كه تا كنون يك بررسي جامع در خصوص اين كتاب انجام نشده است اين پژوهش انجام شد و اميدواريم كه در آينده بتوانيم اطلاعات موجود در اين كتاب ارزشمند را استخراج و در صورت امكان به صورت يك پايگاه دادهي مناسب درآوريم. واژگان كليدي: طب سنتي، الصيدنه في الطب، پايگاه داده. طب سنتي يكي از علوم تجربي است كه با ظهور و پيدايش علوم مدرن همچنان اهميت و جايگاه خود را مانند گذشته حفظ كرده است. طب سنتي كه در گذشته حاصل كسب تجارب در زمينهي استفاده از روشهاي درماني مختلف بوده است امروزه به صورت آكادميك و سازمان يافته شده تدريس و مورد بهره برداري قرار ميگيرد. طب سنتي بنابر تعريف ارائه شده توسط سازمان بهداشت جهاني عبارت است از مجموعهاي از مهارتها، دانش و روشهاي مبتني بر تجربه كه به منظور پيشگيري، كاهش و درمان انواع بيماريها مورد استفاده قرار ميگيرد. كتاب الصيدنه في الطب (داروشناسي در پزشكي) آخرين اثر ابوريحان بيروني است كه به صورت تنها نسخهي اصلاح نشده به زبان عربي به ما رسيده است. اين اثر گرانبها منبعي در داروشناسي سدههاي ميانهي خاورزمين است كه در آن بيش از هزار دارو با منشا گياهي، حيواني و معدني با اشاره به نامهاي آنها به بسياري از زبانها و گويشها توصيف شده است. در صيدنه اثري از مدح و اهدا نامه معمول ديده نميشود و از هدفهاي نوشتن آن نيز مستقيما سخني نرفته است. بيروني با درك اهميت زياد اين مسئله، حدود ???? نام گياه، حيوان، مادهي معدني و فراوردههاي آنها را به زبانهاي عربي، يوناني، سرياني، هندي، فارسي، خوارزمي، سغدي، تركي و جز اينها گرد آورده و توضيح داده است و بدين ترتيب گام جديدي در راه تنظيم و ترتيب اصطلاحات دارويي زمان خود برداشته است. با توجه به اين كه تا كنون يك بررسي جامع در خصوص اين كتاب انجام نشده است اين پژوهش انجام شد و اميدواريم كه در آينده بتوانيم اطلاعات موجود در اين كتاب ارزشمند را استخراج و در صورت امكان به صورت يك پايگاه دادهي مناسب درآوريم. واژگان كليدي: طب سنتي، الصيدنه في الطب، پايگاه داده.
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The effect of (E)-2-(1,3-diarylallylidene) malononitrile derivatives on the growth, proliferation, and apoptosis of MCF7 breast cancer cells
Hosna Alborzi 2023 -
Structure-based virtual screening to discover potential inhibitor molecules for human monocarboxylate transporter 1 (hMCT1) in outward-open conformation
Mina Barhoon 2023In the tumor microenvironment, differences in cancer cells' access to nutrients and oxygen modify cellular metabolism. Hypoxic cancer cells turn to glycolytic metabolism to survive and proliferate, producing large amounts of lactate that must be tra orted out of the cell. During a metabolic symbiosis, oxidative cancer cells import the excess lactate and use it as a preferred fuel instead of glucose. Lactate tra ort is facilitated by monocarboxylate membrane tra orters (MCTs) belonging to the solute carrier gene family-16, which is a proton-dependent process and plays a role in intracellular pH regulation. The export of lactate from the cell is mainly facilitated by MCT4, while MCT1 mediates its intracellular uptake. Overexpression of these tra orters has been shown to be associated with a variety of malignancies, including breast, gastric, lymphoma, brain, lung, skin, and soft tissue cancers, and targeting them could be a potential treatment for some types of cancer. In this study, we used various virtual screening techniques including pharmacophore modeling, molecular docking and molecular dynamics simulation to identify effective and potential drug candidates against human MCT1. The atomic coordinates of the protein in outward-open conformation were downloaded from the protein data bank with the code 6LYY, and a library of chemical compounds including 12 million molecules purchasable from the ZINC database and 4683 FDA-approved drugs was created. After performing the preparation steps, molecular docking calculations were performed based on a consensus approach using AutoDock Vina, Molegro, and DOCK programs. Ligands with high binding energy were analyzed in successive steps, and their interaction with key residues of the protein active site was investigated. Finally, seven ligands that showed promising results were selected for the molecular dynamics simulation study. For each protein-ligand complex in the membrane bilayer, calculations of protein backbone RMSD, ligand RMSD, RMSF, and interaction analyses were performed. The results showed that Olmesartan, an angiotensin II receptor inhibitor, can have an inhibitory effect on human MCT1 with a strong and stable binding and pave the way to inhibit this tra orter. Since this study is based solely on computational tools, further evaluation in experimental conditions is necessary to confirm its effectiveness.
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Examining simultaneous effect of eugenol and ascorbic acid on gene involved in glucose regulation and transport in alloxan-induced diabetic rats
Edris Mohammadi 2022Natural products, including herbal formulas and extracts, have been used to treat human diseases for thousands of years, serving as valuable resources for treating diabetes. This study aimed to investigate the simultaneous effect of eugenol and ascorbic acid on the expression of genes involved in the regulation and tra ort of glucose in diabetic rats treated with alloxan. To carry out this study, first after preparing the rats, keeping them and adapting them to the environmental conditions, the target groups were made diabetic by injecting 180 mg/kg body weight of the chemical substance alloxan and after making sure that they had diabetes; treatment with gavage of 10 mg/kg of body weight of eugenol and injection of 100 mg/kg of body weight of ascorbic acid to the target groups continued for 45 days. In the next step, the rats were anaesthetized, and after dissection, their liver and pancreas tissues were separated. After quick freezing with liquid nitrogen, they were placed in a -80 degree refrigerator. In the continuation of the work, RNA was isolated from all liver and pancreas tissues and cDNA synthesis was performed for all treatment and control samples. Then the expression of genes in pancreatic and liver tissue was checked using the Real-time PCR method. The results showed that the expression of Ins1/2, InsR, Glut2, and Pdx1 genes in the pancreatic tissue of treated rats increased significantly (P ? 0.05) compared to the diabetic control group, and the expression of Tnf? gene in the pancreatic tissue compared to the control group Diabetic showed a significant decrease in expression. In addition, in the liver tissue of the treated group, the expression of Glut1 and Glut2 genes significantly decreased compared to the diabetic and non-diabetic control groups, the expression of Tnf? gene compared to the diabetic control group without significant change, and increased compared to the non-diabetic control group, the expression of InsR gene showed no significant change compared to the diabetic control group and a significant decrease compared to the non-diabetic control group. Therefore, investigating the simultaneous effect of eugenol and ascorbic acid on the expression of genes involved in the regulation and tra ort of glucose in diabetic rats showed that these natural products have an effect on blood sugar levels and also the antidiabetic capacity of the samples Treated with these products compared to tissue samples of diabetic control, they showed a significant increase in expression and a decrease in expression compared to non-diabetic control. Keywords: eugenol, ascorbic acid, rats, diabetes, glucose tra ort
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Evaluation of the effect of vitamin C and eugenol on fertility and the expression of genes involved in self-renewal (Gfr?1) and differentiation (C-kit) of spermatogonial stem cells in rat
Jafar Zadehsafari 2022Abstract Today, infertility is considered one of the most important problems in men, in such a way that clinical and epidemiological evidence has confirmed the increase in infertility in men. Several factors such as ionizing rays, magnetic fields, smoking, and some drugs lead to an increase in infertility in men. On the other hand, due to the effectiveness of some herbal medicines and chemical compounds in increasing male fertility, extensive research has been done to discover biologically active substances that can overcome the problem of male infertility. Also, due to the wide applications of stem cells, especially spermatogonial sperm cells (SSCs), and the use of natural substances, it has provided new hope for the treatment of many human diseases, especially infertility and maintaining fertility in men. vitamin C, due to the glutathione enzyme dependent on dehydroascorbic acid reductase, keeps the amount of vitamin C in the testicular tissue at a high level, in increasing the activity of sperm movement, increasing the quality Semen and fertility of rats play an important role, also Eugenol is a phenolic compound derived from clove extract, which has antioxidant, anti-inflammatory, and anti-cancer effects, Few studies have been done on the effect of these two compounds on SSCs. Therefore, this study was designed with the aim of studying the effect of vitamin C and eugenol treatment on fertility and the expression of genes involved in self-renewal (Plzf, Sox2) and differentiation (Dazl) of spermatogenic stem cells in rats. For this purpose, after treating the animals, their testicular tissue was separated. The expression patterns of different molecular markers in the testis were investigated using RT-PCR methods and histomorphological analyses of the testis tissue and the counting of its spermatogonia, spermatocytes, and spermatids.The results of this study showed an increase in the number of spermatogonial, spermatocytes, and spermatids cells in testicular tissue. In addition, it was found that the genes involved in self-renewal (Plzf, Sox2) and differentiation (Dazl) are expressed at the transcript level. Also, this study indicated that the use of eugenol alone had a greater effect than its treatment with other compounds, in addition, it was determined that vitamin C in the body according to the environmental conditions of the cell and the presence of free transition metals such as copper and iron. In addition to its antioxidant properties, it can also have a pro-oxidant effect.Overal, this study has presented a new perspective on the effect of natural substances and antioxidants on the expression pattern of molecular markers in SSCs and the increase in the number of sperm progenitor cells in rat testicular tissue. Keywords: Treatment, Vitamin C, Eugenol, Self-renewality, Differentiation, Spermatogonial stem cells, Rat, Fertility
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Synthesis and identification of new sulfonamide derivatives of tamoxifen and tamsulosin and evaluation of their inhibitory effect on carbonic anhydrase II activity
Sajad Shahbazian 2022 -
Synthesis and identification of new derivatives of 4-sulfamoyl phenyl diazocarboxylic acid and investigation of their effect on inhibition of carbonic anhydrase II
Nima Fatahian Bavandpoor 2022Carbonic anhydrase (CAs, EC 4. 2. 1. 1) is a family of zinc metalloenzymes that catalyzes vital reactions including the reversible conversion of carbon dioxide and water to bicarbonate and a proton. Carbonic anhydrase isozymes are involved in various physiological and pathological processes and are considered as important drug targets for the treatment of a wide range of disorders including glaucoma and various types of cancer. In this study, new sulfonamide derivatives resulting from the coupling reaction of sulfanilamide with benzene or its mono-, di-, tri- carboxylic acid compounds were chemically synthetized and their interaction with hCA II isozyme were investigated by various spectroscopic techniques. Kinetic results revealed that new sulfonamide derivatives inhibit the esterase activity of hCA II in a reversible competitive manner. As a result, among the studied compounds, compound 4 had the lowest Ki and IC50 values for hCA II isozyme. Also, fluorescence measurements showed that these compounds quench the intrinsic fluorescence of hCA II by a dynamic quenching mechanism. In addition, analysis of the thermodynamic parameters of the binding revealed that hydrogen bonds and van der Waals interactions play the major role in stabilization of the enzyme–drug complexes. Fluorescence analysis of the CAII-DNSA fluorescent complex in the presence of different concentrations of new sulfonamide derivatives showed the lowest dissociation constant (Kd) for the compound 4, indicating a higher affinity of this compound for the binding to the hCA II isozyme. Overall, the strengthening of the binding power and inhibitory activity of the studied sulfonamide derivatives for the hCA II isozyme, makes these derivatives of great interest for the design of novel hCA inhibitors.
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Comparing the influence of different kinds of aerobic activities on autism-like behavior resulting from consuming high-fat foods in male rats.
Hosein Nazari 2021 -
Association of A118G polymorphism in OPRM1 gene with type2 diabetes mellitus
Vafa Safaei 2021Over the past three decades, the increase in the number of people with diabetes has made it one of the most important challenges to all nations. The global prevalence of diabetes mellitus is increasing rapidly following lifestyle changes. Type2 diabetes mellitus is a complex multifactorial disease characterized by the interaction between multiple genetic loci and various environmental factors. Differences in the risk of developing type2 diabetes between different ethnic groups indicate the influence of genetic predisposition to developing it. The OPRM1 gene encodes the mu-opioid receptor, which is the major target for both endogenous and exogenous opioids in the pain relief process. Several studies examining the association between type2 diabetes and the 6q24-q27 region have suggested a role for the OPRM1 gene, based on its chromosomal location, in the risk of developing the disease. Another research suggests that the mu-opioid receptor may modulate genes involved in glucose metabolism, leading to lower plasma glucose levels. The most common single nucleotide polymorphism ( ) in the coding region of the human OPRM1 gene is the A118G variant, which results from the replacement of adenine with a guanine. This variant has been reported to alter both endogenous ligand (?-endorphin) binding and receptor signalling following this binding. The aim of this study was to investigate the association of A118G polymorphism in the OPRM1 gene with type2 diabetes mellitus because according to the above, the study of the gene polymorphisms can provide a new strategy for the prognosis of the disease and improvement of treatment strategies. In this study, 207 diabetic and 201 non-diabetic individuals (as controls) were selected and blood samples were taken from these individuals. Blood samples were used to extract DNA. The extracted DNA was used for PCR reaction to analyze for polymorphism using primers pre-designed by Primer1 online software, and then the PCR product was used for sequencing studies. Finally, the results of sequencing were analyzed to examine the presence of the in different individuals. Sequencing results showed the presence of the corresponding polymorphism in the diabetic samples, while it was not found in control samples. Therefore, given the role of the OPRM1 gene in glucose metabolism, the presence of this polymorphism may be related to the risk of developing type2 diabetes; However, definitive results require further research.
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Study of transport of cationic amino acids through CAT-1 facilitator by homology modeling and molecular dynamics simulation methods
Maral Afshinpour 2020Arginine is a semi-essential amino acid, which participates in many metabolic pathways, such as nitric oxide, creatine and urea synthesis. The availability of arginine is determined by a series of plasma membrane carries called cationic amino acid tra orters (CATs), which are overexpressed in many types of cancers including Acute myeloid leukemia (AML) that is one of the most common cancers in adults and children; therefore, these tra orters have been considered as a putative target in therapeutic and medicinal goals. In the present research, the mechanism of L-arginine tra ort through CAT1 and hotspot amino acids in the tra ortation was investigated using molecular dynamic simulation techniques. For this purpose, prokaryotic CAT1 (p-CAT) with PDB ID 6F34 was received from Protein Data Bank (PDB). Since eukaryotic CAT1 (e-CAT) has not yet solved, the e-CAT structure was modeled using MODELLER 9.20 based on p-CAT as template. After that, because the CAT proteins are membrane tra orters, the proteins were inserted in the suitable membranes using CHARMM-GUI server. Then, molecular dynamics simulation was performed for 300 nanosecond (ns) for each system. In the next stage, L-arginine (L-Arg) was docked against both the equilibrated system using AutoDock VINA, and molecular dynamics simulation was run for 600 ns for each system. In order to calculate total free binding energy of L-Arg, MM- A approach was carried out on both p-CAT and e-CAT trajectories. To determine the contribution of each amino acid residue to the binding energy, the per-residue energy analysis was performed. In the p-CAT/Arg complex, Ile40, Thr43, Asp111, Glu115, Lys191, Phe230, Ile234 and Asp237 had the greatest contribution toward the binding to L-Arg and were formed stable hydrogen bonds with it. The residues Ser44, Glu185, Asp270, Cys271, Ser350, Ser354 and Arg360 were found to be the highest contributing residues that interact with L-Arg in e-CAT/Arg complex. In order to evaluate the tra ortation processes through CAT tra orters and also to study more precisely the role of hot spot amino acids during tra ort, the umbrella sampling method was employed. Hydrogen bond analyses revealed that in p-CAT, the residues Asp237, Glu115, Ser321, Glu245, Lys19 are the most involving residues in interaction with L-Arg during tra ortation. In e-CAT, the residues Asp270, Glu185, Ser22, Asp20 and Arg27 are the most involving residues in interaction with L-Arg during tra ortation. To investigate the effects of membrane lipids on the structures of p-CAT and e-CAT, membrane analyzes such as lipid-protein interaction, MSD, SCD, density and membrane thickness were performed for both systems. The results showed that protein loops had reduced flexibility due to interaction with lipids. Further, in eukaryotic membrane, due to the ordering effect of cholestrol, the SCD value and membrane thickness are higher than prokaryotic membrane.Key words: L-Arginine, CAT1 protein, molecular dynamics simulation, umbrella sampling
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Human serum albumin nanoparticles as an effective exemestane drug delivery system to treat breast cancer: preparation and analysis
Jila Sadeghi 2020Human serum albumin nanoparticles as an effective exemestane drug delivery system to treat breast cancer: preparation and analysis
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Osteology of the desert monitor Varanus griseus (Daudin, 1803) (Familly :Varanidae)
Narges Ghanbari nia 2020خانواده سوسماران مانيتور يا Varanidae يكي از نه خانواده سوسمارهاي ايران است كه تنها داراي يك جنس (مونوفايلتيك) است اما حدود 73گونه در اين جنس قرار دارد. مانيتورها يا بزمچهها بزرگترين سوسماران جهان از لحاظ جثه هستند بزمچهها داراي بدن كشيده، پوزه بلند، كشيده و دوكي شكل هستند و دم در آنها بلند و حدود 5/1 برابر طول بدن است، زبان بلند و دو شاخه و چشمها با پلك متحرك و مردمكي گرد است، بزمچهها روز گرد و شكارچي بوده و آرواره بسيار نيرومندي دارند از جنس وارانوس گونههاي الف) بزمچه بنگال (1802، Daudin) Varanus Bengalensis ب) بزمچه بياباني (1803، Daudin) Varanus griseus ج) بزمچه نسترو Varanus nesterovi )(B?hme, Ehrlich, Milto Orlov & Scholz, 2015) در ايران مشاهده شده است. مطالعه روي جمجمه سوسماران بر روي مسائل مربوط به اختلافات بين جمجمه در موجودات متنوع و منشاء آنها و علت اين اختلافات، تمركز كرده است. در ايران مطالعه جامعي در مورد اسكلت كامل سوسماران صورت نگرفته، و اين در حالي است كه اسكلت تاثير بسزايي در زندگي، حركت، شكار، تغذيه و ... دارد و محيط نيز تاثير مستقيم بر اسكلت جاندار مي گذارد. در اين مطالعه به بررسي اسكلت ( Varanus griseus (Daudin, 1803 و B?hme, Ehrlich, Milto Orlov & Scholz, 2015 Varanus nesterovi ميپردازيم. در اين پروژه براي بررسي اسكلت، از دو روش استفاده شده است. ?. خارج كردن اجزاء اسكلتي و عكسبرداري از آنها. ?. استفاده از روش CTscan. نتيجه استخراج 302 قطعه استخوان ازبدن سوسمار كه 28 قطعه متصل به هم جمجمه جانور را تشكيل ميدهد. در مرحله بعد با استفاده از تصاوير اسكن استخوانهاي خارج شده نامگذاري و اتصالات اسكلتي شناسايي شد. مقايسه اسكلت با گونههاي ديگر جنس وارانوس و خانوادههاي ديگر سوسماران انجام شد و نتيجه وجود تفاوت اندك بين گونهاي و اختلافات چشمگير بين خانوادهها ميباشد كه اين اختلافها ناشي از عوامل متعدد مثل جدايي تكاملي، تفاوت در نوع محيط زيست، تغذيه و رفتار جانور است.
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Spectroscopic and thermodynamic study on the interaction of 1-(4-chloro-benzenesulfonyl)-4-hydroxy-pyrrolidine-2-carboxylic acid and human carbonic anhydrase II
Maryam Ahmadian 2019Carbonic anhydrases (EC 4.2.1.1) are zinc metalloenzymes that catalyze the reversible hydration of CO2 to HCO3? and proton. These enzymes have different distribution in different tissues and subcellular locations, and found in the archaea, eubacteria, animals and plants.These enzymes contributed in vital physiological processes associated with respiration and transfer CO2, secretion of electrolytes in tissues and lungs, pH adjustment, homeostasis, biosynthetic reactions (such as gluconeogenes and lipogenes) and calcification. Carbonic anhydrase inhibitors are a 20px;">Considering all the above data, it can be concluded that binding of 1-(4-chloro-benzenesulfonyl)-4-hydroxy-pyrrolidine-2-carboxylic acid to human carbonic anhydrase II caused changes in the function as well as in the secondary and tertiary structure of the protein. Keywords: 1-(4-chloro-benzenesulfonyl)-4-hydroxy-pyrrolidine-2-carboxylic acid, Human Carbonic Anhydrase II, Inhibition, Thermodynamic Stability, Kinetic Stability, Fluorescence, Quenching
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Subclonig of carbonic anhydrase XII gene in the pET28a expression system andinvestigating the effect of several chemical compounds and their sulfonamide derivativeson the enzymatic activity of carbonic anhydrases II, IX, XII
Somaye Khateri 2019Carbonic anhydrases are well known zinc metalloenzymes involved in the catalysis of carbon dioxide hydration to bicarbonate and proton. The physical and chemical properties of phenolic compounds make these molecules capable of interacting with a wide range of targets, such as the Carbonic anhydrases. In this study the inhibition of two human carbonic anhydrase isozymes II and IX, with a series of phenol derivatives was investigated by using the esterase assay, with p- nitrophenyl acetate as substrate. The IC50 values of quercetin (Q) and its sulfonamide derivative (QD) were 15.99 and 5.13, for carbonic anhydrase II, 54.45 and 28.52 for carbonic anhydrase IX, respectively. These ligands can quench the intrinsic fluorescence of CAII by dynamic quenching mechanism. As the conclusion, binding of these phenolic compounds to the active site of CAII is accompanied by a competitive inhibition of the enzyme. According to the results, these phenolic compounds were more potent inhibitors for CAII Compared to CIX.
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Investigation of effects of resorcinol and resveratrol and their sulfonamide derivatives on the structure of human carbonic anhydrase II
Sana Piri 2019In the present investigation, we analyzed the interaction of resorcinol and resveratrol and their sulfonamide derivatives with human carbonic anhydrase II (hCA II) using fluorescence spectroscopy, molecular docking and molecular dynamics simulation techniques. Fluorescence data obtaining at three temperatures indicated that resveratrol and its sulfonamide derivative quenched intrinsic fluorescence of the enzyme through a static mechanism but resorcinol and its sulfonamide derivative increased intrinsic fluorescence of the enzyme again through a static mechanism. Thermodynamic analysis of the quenching data indicated that hydrogen bonding and van der Waals interactions play important roles in the ligand binding. Based on computational data obtained by molecular docking and molecular dynamics simulation studies, hydrogen bonds are the main intermolecular forces for the ligand-hCA II interactions. In comparison with resveratrol and resorcinol, their sulfonamide derivatives bind stronger to hCA II. According to an assay method basing on fluorometric measurements, the sulfonamide derivatives had a greater inhibitory effect than the original compounds.
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Investigating the effect of Ibuprofen on the expression of Notch1 transcript in gastric cancer stem cells derived from MKN-45 cell line
Frozan Azarafroz 2019 -
Investigating the effect of Ibuprofen on DLL1 gene expression in gastric cancer stem cells derived from MKN-45 cell line
Mohsen Farhangian 2019 -
Isolation, purification and characterization of a protease from an organic-solvent tolerant alkalophilic Bacillus sp.
Shohreh Mohammadi 2018 -
Introduction of degradated products of sunset yellow and allura red dyes as new inducers of human tau amyloid aggregation
2018 -
Spectroscopic and thermodynamic analysis of the interaction between human carbonic anhydrase II and saccharin
KHADIJE SABZI KHOSHNAMI 2018 -
purification of human serum albumin and study of its interaction with hydrochlorothiazide as an anti-high blood pressure drug
2017Serum Albumin is the most abundant protein in the blood circulatory system. Its main duty determinant of plasma oncotic pressure. According to Crystal structure analysis of Human Serum Albumin (HSA) has revealed that it consist of a 585 amino acid residue and its orders three homologous domains (I–III) that each one divided into subdomains A and B. HSA has an extraordinary ligand-binding capacity, making a depot and carrier for many endogenous and exogenous ligands. As for capable HSA of binding to a wide variety of drugs. Thiazide-type diuretics are a first-line therapeutic for patients suffering from hypertension Hydrochlorothiazide is one of these that developed and introduced for more than 50 years. This study was designed to examine the interaction of Hydrochlorothiazide (HCTZ) as a ligand with Human Serum Albumin (HSA) under physiological conditions .To this aim, we are using different biophysical techniques such as UV-vis absorption, circular dichroism (CD), FT-IR Spectroscopy and also fluorescence spectroscopic methods to investigate the binding HCTZ.The results of fluorescence titration revealed that the HCTZ strongly quench the intrinsic fluorescence of HSA through a dynamic quenching mechanism. Binding constants ( ) and the number of binding sites were calculated by using Stern-Volmer equations. Subsequently, the values of and were also calculated, which revealed that the positive enthalpy and entropy values of the interaction of HCTZ and HSA indicate that the hydrophobic interactions played a major role in drug binding process. Computations of the protein surface hydrophobicity (PSH) index by using 1-anilinonaphtalene-8-sulfonate (ANS), also indicated an increased in PSH value upon drug binding. The binding site has been identified by using Warfarin and Ibuprofen as site marker. Also Molecular Docking results indicated HCTZ is placed at subdomain IIA. The results of study far- and near-UV CD experiments showed some variations in the secondary and tertiary structures of protein upon ligation. Also the results of FTIR illustratived that the drug interacted with HSA and induced a partial compactness in the secondary structure of protein. The results identified by the FTIR are in good agreement with CD spectra.
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Isolation, purification and characterization of a thermo-tolerant alkaline protease from a Bacillus sp.
LALE NAZARI 2017 -
Investigation of the interaction between human carbonic anhydrase II and hydrochlorothiazide
Samira Rahimi 2017 -
investigation and determination of acetylcholinerase activity inhibition by methanol extract of aerial parts of Alcea Kurdica and Astragaluse glumaceus
Ramin Mohammadi 2015 -
investigation of intraction between human carbonic anhydrase .. and sunset yellow
Faezeh Hasrati 2015 -
مطالعه ميان كنش آمارانت
2015 -
effect of amaranth and sunset yellow as synthetic food additives on thermodynamic and kinetic stability and esterase -like activity of human serum albumin
Kolsom Ebrahimi 2014 -
Purification of human serum albumin and study of its interactions with amaranth as a synthetic food additive
2013 -
Purification and charactrization of glucoamylase isolated from local aspergillus niger
2013 -
Study of DNA and HSA interactions with Desipramine antidepressant
Sara Pirooz nia 2013 -
Comparative analysis of interactions of human carbonic anhydrase two wyth topiramate and furosemide by molecular dynamics simulation
Masoud Varzandiyan 2013 -
investigation on effects of glibenclamide on the structure and function of human
Mona Pazhohi 2012 -
Determination of the distribution of human serum paraoxonase enzyme of Q|R phenotype by two substrates method in patients who suffer from Ischemic Stroke
Hadis Mousavi 2012 -
Purification and characterization of an extracellular alpha amylase and extraceeular protease from Bacillus subtilis ACC1254
Mehdi Amiri 2012 -
A comparative evaluation of dorzolamide effects on the structure and fuction of bovine and human carbonic anhydrase two
NOOSHEEN BIJARI 2011 -
Investigation of the effects of ferula gummosa bosis extract on cell proliferation and apoptosis induction in cancerous cells
Roghaye Gharaei 2011 -
انداز ه گيري فعاليت آنتي اكسيداني اسانس و عصاره گياه Ferula gummosa Boiss با استفاده از روشهاي CAA و FRAPو DPPH
ABDALREZA NAZARI 2011 -
Comparative evaluation of amyloid fibri formation by native and modified beta-lactoglobulin. aloha-lactalbumin and some subsection of caseins
2011 -
Spectroscopic study on the interaction of topiramate with human carbonic anhydrase | Thermodynamic charactrization of the binding process
Mohammad reza Ashrafi kooshk 2010 -
Purification of Human Carbonic Anhydrase two and Study of the Furosemide Effects on its Structure and Function
Samira Ranjbar roien tan 2010 -
purification of isoenzyme VI of actinidin by chromatofocusing and studying the effect of calcium on its structure and function
2010 -
Cloning and expression of che a ,the major allergen of Chenopudium Album
2009 -
Study of paraoxonase - gene polymorphism in a healthy population of khoramabad
2009 -
Optimization of Lipid Transfer Protein *LTP* purification and production of LTP-Bovine Serum Albumin *LTP-BSA* conjugate and polycloand antibody against LTP LTP-Bovine serum Albumin *LTP-BSA* conjugate and polyclonal antibody against LTP
2009 -
Purification of Human Carbonic anhydrase and Study of inhibitory Effect of Celecixib on it
2009 -
Interaction of Bovine Carbonic Anhydrase2 (BCA2) with Timolol
2008 -
The Study of Stability Effect of Zarious Osmolytes on Thermoinactivation of Bovine Liver Glutamate
2008 -
An Investigation of the point Mutation at 249 Codon of Number 7 of Gene P53 in Liver Cancer Cases in Kermanshah City and Finding out the Same Mutation in the Liver of Mices Exposed to Aflatoxin b1
2008

